CDS

Accession Number TCMCG007C33212
gbkey CDS
Protein Id NP_001288833.1
Location complement(join(<22305689..22305694,22305696..22305945,22306180..22306470,22306563..22307370,22307440..22309597))
Gene LOC103869720
GeneID 103869720
Organism Brassica rapa

Protein

Length 1172aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source NM_001301904.1
Definition phytochrome B [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
KEGG_ko ko:K12121        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04712        [VIEW IN KEGG]
map04712        [VIEW IN KEGG]
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006066        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006714        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0006721        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006833        [VIEW IN EMBL-EBI]
GO:0006873        [VIEW IN EMBL-EBI]
GO:0006874        [VIEW IN EMBL-EBI]
GO:0006875        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007602        [VIEW IN EMBL-EBI]
GO:0007623        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009581        [VIEW IN EMBL-EBI]
GO:0009582        [VIEW IN EMBL-EBI]
GO:0009583        [VIEW IN EMBL-EBI]
GO:0009585        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009606        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009629        [VIEW IN EMBL-EBI]
GO:0009630        [VIEW IN EMBL-EBI]
GO:0009637        [VIEW IN EMBL-EBI]
GO:0009638        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009640        [VIEW IN EMBL-EBI]
GO:0009642        [VIEW IN EMBL-EBI]
GO:0009645        [VIEW IN EMBL-EBI]
GO:0009649        [VIEW IN EMBL-EBI]
GO:0009687        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009755        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009867        [VIEW IN EMBL-EBI]
GO:0009881        [VIEW IN EMBL-EBI]
GO:0009883        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010017        [VIEW IN EMBL-EBI]
GO:0010018        [VIEW IN EMBL-EBI]
GO:0010029        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010114        [VIEW IN EMBL-EBI]
GO:0010148        [VIEW IN EMBL-EBI]
GO:0010161        [VIEW IN EMBL-EBI]
GO:0010202        [VIEW IN EMBL-EBI]
GO:0010218        [VIEW IN EMBL-EBI]
GO:0010244        [VIEW IN EMBL-EBI]
GO:0010374        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010617        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0015979        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0017006        [VIEW IN EMBL-EBI]
GO:0017007        [VIEW IN EMBL-EBI]
GO:0017012        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019725        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0030003        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031347        [VIEW IN EMBL-EBI]
GO:0031516        [VIEW IN EMBL-EBI]
GO:0031517        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032787        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0038023        [VIEW IN EMBL-EBI]
GO:0042044        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0042752        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0042803        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043288        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046983        [VIEW IN EMBL-EBI]
GO:0048511        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048878        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050801        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051480        [VIEW IN EMBL-EBI]
GO:0051606        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055065        [VIEW IN EMBL-EBI]
GO:0055074        [VIEW IN EMBL-EBI]
GO:0055080        [VIEW IN EMBL-EBI]
GO:0055082        [VIEW IN EMBL-EBI]
GO:0060089        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071214        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071395        [VIEW IN EMBL-EBI]
GO:0071478        [VIEW IN EMBL-EBI]
GO:0071482        [VIEW IN EMBL-EBI]
GO:0071489        [VIEW IN EMBL-EBI]
GO:0071490        [VIEW IN EMBL-EBI]
GO:0071491        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072503        [VIEW IN EMBL-EBI]
GO:0072507        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0080134        [VIEW IN EMBL-EBI]
GO:0090558        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098771        [VIEW IN EMBL-EBI]
GO:0104004        [VIEW IN EMBL-EBI]
GO:1900140        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901615        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]
GO:1902644        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1990841        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000028        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTTTCCGGAGTCGGCGGCGGCGGAGGAAGCGGCGGGAGTGGCCGCGGCGGCGGCCGCGGCGGAGAGGAATCCTCGTCAACTCACCGGAGAGAACAAGCTCAATCCTCAGGTACAAAATCTCTCAGGCCACAGAGCCAACCACAAACGGAATCAATCAGCAAAGCTATTCAGCAATACACAGTCGACGCTCGACTCCACGCCGTCTTCGAACAATCCGGCGAGTCAGGAAGATCCTTCGACTACTCGCAATCCCTCAAAACGACGACGTACGGCTCCTCGGTCCCGGAGCAGCAGATCACGGCCTACCTCTCCAGGATCCAGCGCGGCGGCTACATCCAGCCGTTCGGATGCATGATCGCCGTCGACGAGTCCACCTTCGCCATCATCGGCTACAGCGAGAACGCGCGGGAAATGCTCGGCCTCACGCCCCAGTCCGTCCCCAGCCTCGAGAGGCCCGAGATTCTCGCCATGGGGACCGACGTCCGCTCCCTCTTCACCTCCTCCAGCTCGGTCCTCCTCGAACGCGCCTTCGTGGCGCGTGAGATCACGCTCCTGAATCCCGTTTGGATCCACTCCAAGTACACTGGTAAACCGTTTTACGCTATCTTACACAGGATCGACGTTGGAGTCGTGATCGATTTGGAGCCGGCGAGGACTGAGGATCCAGCGCTTTCCATCGCCGGAGCGGTTCAGTCTCAGAAGCTAGCCGTTCGCGCTATCTCGCAGTTACAGTCTCTCCCCGGTGGAGATATTAAGCTGCTTTGTGATACGGTTGTGGAGAGTGTGAGGGACTTAACCGGATACGACCGTGTGATGGTGTACAAGTTTCACGAAGACGAGCATGGAGAGGTTGTTGCGGAGAGTAGGAGAGAGGATTTGGAGCCTTACATTGGTTTGCATTATCCAGCTACTGATATTCCTCAAGCGTCACGGTTCTTGTTTAAGCAGAATCGAGTGCGTATGATTGTTGATTGCCACGCGACGCCGGTTCTCGTGGTGCAAGACGATAGGCTGACTCAGTCTATGTGCTTGGTTGGGTCTACTTTGAGAGCTCCTCACGGTTGTCACTCTCAGTATATGGCTAATATGGGGTCTATCGCGTCTTTAGCGATGGCGGTTATAATAAACGGGAGTGAAGAAGATGGGAGTAGTGTCGCTGGTGGGAGAAGCGCTATGAGGCTTTGGGGTTTAGTCGTTTGCCATCATACTTCTTCTCGATGCATACCGTTTCCGTTGAGGTATGCTTGCGAGTTTTTGATGCAGGCGTTTGGTTTACAGTTGAACATGGAGTTGCAGTTGGCTTTGCAGATGTCGGAGAAACGCGTTTTGAGGACGCAGACGCTGTTGTGCGATATGCTTCTGCGTGACTCGCCTGCTGGGATTGTTACGCAGAGTCCTAGTATCATGGACTTGGTGAAATGTGACGGTGCAGCGTTTCTTTACCACGGGAATTATTACCCGTTGGGTGTTGCTCCGACGGAAGCTCAGATTAAAGACGTTGTGGAGTGGTTGCTTGCGAATCACGCTGATTCAACTGGTTTAAGCACTGATAGTTTAGGGGACGCAGGTTATCCCGGAGCAGCTGCGTTAGGGGATGCTGTGTGCGGTATGGCGGTTGCGTATATCACAAAAAGAGATTTCCTTTTCTGGTTTCGTTCTCATACAGCTAAAGAGATCAAATGGGGAGGCGCTAAGCATCATCCAGAGGACAAAGATGATGGGCAAAGGATGCATCCTCGCTCTTCTTTCAAGGCTTTTCTTGAAGTTGTTAAGAGTCGGAGTCAGCCGTGGGAAACTGCGGAAATGGATGCGATTCATTCGCTCCAGCTGATTCTAAGGGACTCTTTTAAGGAATCTGAGGCAGCTATGAACTCGAAAACTGCAGATGGCGCGGTTCAGCCTTATAGTATGGCAGGAGAGCAGGGGATTGATGAGTTAGGTGCTGTTGCAAGAGAGATGGTTAGACTCATCGAGACAGCAACGGTGCCTATATTCGCTGTGGATGCTGGAGGATGCATCAATGGATGGAACGCTAAGATTGCAGAGTTGACCGGTCTCTCGGTTGAAGAAGCTATGGGGAAGTCTCTGGTTTCTGATCTGATATACAAAGAGAATGAAGAAACTGTTGATAAGCTCATTTCTCGTGCGCTCAGAGGGGACGAGGACAAGAATGTGGAGATAAAGCTGAAAACTTTCAGCCCTGAACTACAAGGGAAAGCGGTTTTTGTGGTTGTGAATGCATGTTCGAGCAAGGACTACTCAAACAACATTGTTGGCGTCTGTTTTGTGGGACAGGATGTTACTGGTCAGAAAATCGTAATGGACAAGTTCATCAACATACAAGGAGACTACAAAGCCATTGTCCATAGCCCAAACCCACTGATTCCACCAATCTTTGCGGCGGACGAGAACACGTGCTGCCTGGAGTGGAACACCGCATTGGAAAAGCTCACTGGTTGGTCTCGCAGTGAAGTGATTGGGAAAATGCTTGTTGGGGAAGTGTTTGGGAGCTGTTGCAGGCTAAAGGGTCCTGATGCATTAACCAAGTTCATGATTGTGTTGCATAATGCGATCGGTGGCCAAGAAACAGACAAGTTCCCTTTCCCATTCTTTGACCGCAACGGGAAGTTTGTTCAGGCTCTACTGACTGCAAACAAGCGTGTAAGCTTCGATGGAAAGGTTATTGGGGCTTTCTGTTTCTTGCAGATCCCGAGTCCTGAGCTGCAGCAAGCTTTAGCAGTTCAACGAAGGCAGGACACAGAGTGTTTCACGAAGGCGAAAGAGCTAGCTTACATTTGTCAGGTGGTAAAGAATCCTTTGAGCGGTTTGCGTTTCACAAACTCGTTGTTGGAAGCTACAGACTTGAACGAGGATCAGAAACAGCTTCTTGAAACAAGTGTTTCTTGCGAGAAACAGATTTCCAGGATTGTCAGTGACATGGATCTTGAAAGAATTGAAGACGGTTCGTTTGAGCTAGTTAGAACGGAGTTTTTACTCGGAAGTGTCATCAACGCGATTGTAAGCCAGGCGATGTTCTTATTAAAGGAGAGAGGTGTTCAGCTGATCCGTGACATTCCTGAAGAGATCAAATCTATACAAGTTTATGGAGACCAGACAAGGATTCAACAGCTCCTAGCTGAGTTTCTGCTGAGTATAATCCGGTATGCACCGTCCCATGAGTGGGTGGAGATCCATATAAGCCATGTTCCGAAGCAAATGGCTGATGGATTCTACGCTATTCGCACAGAATTTAGAATGGCGTGCCCAGGTGAAGGTCTGCCTCCAGAGCTAGTCCGAGACATGTTTCATAGCAGCAGGTGGACGAGCCCTGAAGGGTTAGGACTAAGCGTATGTAGAAAGATTCTAAAGATCATGAACGGTGAGGTTCAGTACATCCGAGAGTCGGAACGTTCCTATTTCCTCATCATACTCGAGCTCCCGGTGCCTATGAAACGCCCTTTGTCAACCGCTAGTGGCAGCGGAGACATGATGTTGATGATGCCAAGTAGT
Protein:  
MVSGVGGGGGGCGGSGRGGGRGGEESSSTHRREQAQSSGTKSLRPQSQPQTESISKAIQQYTVDARLHAVFEQSGESGRSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESTFAIIGYSENAREMLGLTPQSVPSLERPEILAMGTDVRSLFTSSSSVLLERAFVAREITLLNPVWIHSKYTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDAVVESVRDLTGYDRVMVYKFHEDEHGEVVAESRREDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGSEEDGSSVAGGRSAMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGNYYPLGVAPTEAQIKDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTADGAVQPYSMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVDKLISRALRGDEDKNVEIKLKTFSPELQGKAVFVVVNACSSKDYSNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTALEKLTGWSRSEVIGKMLVGEVFGSCCRLKGPDALTKFMIVLHNAIGGQETDKFPFPFFDRNGKFVQALLTANKRVSFDGKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVVKNPLSGLRFTNSLLEATDLNEDQKQLLETSVSCEKQISRIVSDMDLERIEDGSFELVRTEFLLGSVINAIVSQAMFLLKERGVQLIRDIPEEIKSIQVYGDQTRIQQLLAEFLLSIIRYAPSHEWVEIHISHVPKQMADGFYAIRTEFRMACPGEGLPPELVRDMFHSSRWTSPEGLGLSVCRKILKIMNGEVQYIRESERSYFLIILELPVPMKRPLSTASGSGDMMLMMPTS